Documentation
Cell Types
CellSeekr allows for customization of immune identities.
The following pre-computed cell types are provided as baselines:
T cells
UBC+PTPRC+CD3D+NCAM1-
NK cells
UBC+PTPRC+NCAM1+CD3D-
Myeloid cells
UBC+PTPRC+CD14+
TREGS
UBC+PTPRC+CD3D+CD4+FOXP3+
M1 MACROPHAGES
UBC+PTPRC+CD14+FCGR1A+CD80+
M2 MACROPHAGES
UBC+PTPRC+CD14+CD163+MRC1+
GRANULOCYTIC MDSc
(G-MDSC)
UBC+PTPRC+CD33+HLAD-RA-FUT4+
MONOCYTIC MDSc
(M-MDSC)
UBC+PTPRC+CD33+HLAD-RA-FUT4-
CD45- CELLS
UBC+PTPRC-
immune cells
UBC+PTPRC-
NEURONS
RBFOX3+
ASTROCYTES
ATP1B2+ALDH1L1+ITGAM-PTPRC-
all cells
UBC+